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COVID-19 Testing Supply Chain


0


February 25, 2021


Introduction
COVID-19   testing-including for diagnosis, screening, and
surveillance-is a critical component of responding to the
COVID-19   pandemic, and its implementation has posed
numerous  challenges. Issues have included those related to
Food and Drug  Administration (FDA) regulation of tests,
reimbursement  and coverage for testing, equitable access to
testing, and infrastructure and supply chain stressors,
among  others. In particular, the diagnostic testing supply
chain has shown evidence of significant and ongoing stress
since early in the pandemic, and problems persist with
ascertainment, production, and distribution of almost all
testing supply chain components.

COVID-19   tests include molecular (e.g., polymerase chain
reaction, PCR), antigen, and serology tests. Molecular and
antigen tests are used for diagnosis, screening, and
surveillance, while serology tests are currently used only
for surveillance. Tests may be available in different settings
based on their Emergency Use Authorization (EUA).
Specifically, they may require a central laboratory for
processing; may be available at the point-of-care in a
Clinical Laboratory Improvement Amendments   (CLIA)-
regulated environment; or may be nonlaboratory tests, able
to be carried out in any setting, including the home. Tests
with EUA  may  be commercially manufactured test kits,
which include all required test reagents in a single unit, or a
laboratory-developed test (LDT), which are tests developed
by and carried out in specific clinical laboratories. Although
commercial  test kits and the platforms to run them may be
in short supply, LDTs rely on numerous reagents and
components, most of which have been variably in shortage.

Private efforts, spearheaded by the American Society for
Microbiology (ASM)   and the Association for Supply Chain
Management   (ASCM),  nationally monitor and publicly
report on inventory and supply shortages experienced by
clinical laboratories. Recent data from these efforts indicate
that clinical laboratories are operating at 40% of their
capacity, that key supply shortages continue (e.g., test kits,
consumables), and that supplies for non-COVID-19 testing
are being affected. The Biden Administration's National
Strategy for the COVID-19 Response  and Pandemic
Preparedness notes that in an end-to-end manner the
federal government will identify, inventory, and monitor
the need, availability, and manufacturing capacity of critical
supplies, including for testing and Personal Protective
Equipment  (PPE).

Testing Supply Chain
To date, testing supply chain issues have largely arisen with
molecular tests and specifically real-time RT (reverse
transcriptase)-PCR tests that are carried out in central
laboratories. These tests are highly complex, require


specialized equipment and trained personnel, and involve
numerous  steps. Steps include sample collection, storage,
and transport; sample preparation, including extraction of
nucleic acid; and sample analysis and processing. These
steps are described in further detail below.

Point-of-care and nonlaboratory tests are generally less
complex. While they require fewer steps, they sometimes
rely on specialized equipment for processing, but are often
able to be read visually. These tests are simpler to
manufacture and have a less intricate supply chain;
however, this type of test was authorized for clinical use by
the FDA  later in the pandemic, and so supply chain issues
have manifested more recently. Shortages have included
foam  swabs, nitrocellulose paper, and machinery needed to
manufacture the tests.

In order to support the manufacturing and procurement of
medical countermeasures to COVID-19,  the Trump
Administration developed Operation Warp Speed  (OWS),
an interagency effort involving the Department of Defense
(DOD),  the Department of Health and Human Services
(HHS),  and public-private partnerships between these
agencies and the biomedical industry. Under the Biden
Administration, OWS  is being modified and renamed.
Acting through OWS,  DOD,  and HHS  invested to increase
the manufacturing of COVID-19  diagnostics and procured
diagnostics and ancillary supplies (e.g., pipette tips) for use
in responding domestically to the pandemic. For example,
DOD   recently awarded $231.8 million to Ellume to
increase production of its at-home over-the-counter test and
procure 8.5 million tests.

Sample   Collection
Individually wrapped, sterile, single-use swabs are the
preferred tool to collect upper respiratory samples. Some
tests may allow patients to swab themselves, while others
require a health care professional to perform the sampling.
Swabs  used specifically for testing are FDA-regulated
products constructed with a flexible stem and a bud made of
synthetic materials that do not contaminate or interact with
the patient sample. These are not substitutable with other
cotton swabs or buds. Reports of swab shortages have been
ongoing throughout the pandemic, representing a limiting
factor in achieving adequate levels of testing nationwide.

Sample   Storage  and  Transport
Swab  samples must be placed in a preserving chemical
solution while in transport to a lab for analysis. Point-of-
care and nonlaboratory tests, in which evaluation of the
sample is conducted almost immediately after it is taken, do
not require sterile transport. The most common preserving
transport solution is Viral Transport Medium (VTM), which


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